Thanks everyone. I ran a script basically the same as the one pmoncho posted as the first reply. After doing that I then used this from Spiceworks https://community.spiceworks.com/topic/1992814-gpo-to-automatically-create-a-mapped-folder-for-new-users-which-created-from-tem
Create a GPO.
User Configuration>Preferences>Drive Map
To use the user's name in path, use %LogonUser%
While in the path box, if you press F3, a box will pop up showing you all your variable options
After setting that up the domain users have the two new shares showing up (home folder and Shared ) and their file permissions etc seem to be just right and sending them where they need to go to use their files. I have told them not to use the use recent files from their apps but to search open from the new shares. I am a little scared about getting rid of the files from the old server. Should I just change the permission on the older files to denied or read only? Anyone already figured this out?